BaseTools: fix --genfds-multi-thread generate makefile issue

1. when inf file is binary module, not generate makefile,
  so need generate ffs with previous method.
2. generate Ui section maybe override and the string is not
  $(MODULE_NAME)
  like as:
  INF  RuleOverride = UI MdeModulePkg/Application/UiApp/UiApp.inf
3. Trim generate incorrect Offset.raw when some vfr not generate .lst
   file in Debug directory, Trim get the VFR name with the .c files
   replacement.
4. fix some depex file not generate issue

Cc: Liming Gao <liming.gao@intel.com>
Cc: Yonghong Zhu <yonghong.zhu@intel.com>
Contributed-under: TianoCore Contribution Agreement 1.1
Signed-off-by: Yunhua Feng <yunhuax.feng@intel.com>
Reviewed-by: Yonghong Zhu <yonghong.zhu@intel.com>

BaseTools/Source/Python/Trim/Trim.py

@@ -1,7 +1,7 @@
 ## @file
 # Trim files preprocessed by compiler
 #
-# Copyright (c) 2007 - 2017, Intel Corporation. All rights reserved.<BR>
+# Copyright (c) 2007 - 2018, Intel Corporation. All rights reserved.<BR>
 # This program and the accompanying materials
 # are licensed and made available under the terms and conditions of the BSD License
 # which accompanies this distribution.  The full text of the license may be found at
@@ -437,7 +437,7 @@ def GenerateVfrBinSec(ModuleName, DebugDir, OutputFile):
         for CurrentDir, Dirs, Files in os.walk(DebugDir):
             for FileName in Files:
                 Name, Ext = os.path.splitext(FileName)
-                if Ext == '.lst':
+                if Ext == '.c' and Name != 'AutoGen':
                     VfrNameList.append (Name + 'Bin')
 
     VfrNameList.append (ModuleName + 'Strings')